[BioC] Errors w/ getBioC()
Matthew Hannah
Hannah at mpimp-golm.mpg.de
Mon Aug 30 10:05:45 CEST 2004
I'm getting an error with R 2.0 devel, trying to install bioC devel. See
below.
It worked when I updated about a month ago but I tried last week and it
didn't work, and again today, is there a problem at the moment?
Cheers,
Matt
> source("http://www.bioconductor.org/getBioC.R")
>
> getBioC(develOK=TRUE)
Running getBioC version 1.2.64....
If you encounter problems, first make sure that
you are running the latest version of getBioC()
which can be found at: www.bioconductor.org/getBioC.R
Please direct any concerns or questions to
bioconductor at stat.math.ethz.ch.
[1] "Installing reposTools ..."
Loading required package: reposTools
Error in getBioC(develOK = TRUE) :
default: targets affy, cdna and exprs.
exprs: packages Biobase, annotate, genefilter, geneploter, edd,
ROC, multtest, pamr vsn, and limma.
affy: packages affy, affydata, annaffy, affyPLM, makecdfenv,
and matchprobes plus 'exprs'.
cdna: packages marray, vsn, plus 'exprs'.
prog: packages graph, hexbin, externalVector.
graph: packages graph, Rgraphviz, RBGL
widgets: packages tkWidgets, widgetTools, DynDoc.
design: packages daMA and factDesign
externalData: packages externalVector and rhdf5.
database: AnnBuilder, SAGElyzer, Rdbi and RdbiPgSQL.
analyses: packages Biobase, ctc, daMA, edd, factDesign,
genefilter, geneplotter, globaltest, gpls, limma,
RMAGEML, multtest, pamr, wvalue, ROC, siggenes and
splicegear.
annotation: packages annotate, AnnBuilder, humanLLMappings
KEGG, GO, SNPtools, makecdfenv and ontoTools.
proteomics: packages gpls, PROcess and apComplex.
arrayCGH: packages aCGH, DNAcopy, repeated, and rmutil.
all: All of the Bio
>
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