[BioC] Limma and Benjamini FDR

[michael watson (IAH-C)]

Hi

I was just browsing through my collection of papers and came across this
one:

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dop
t=Abstract&list_uids=12584122

Here Benjamini has released an R script that analyses microarray data
and controls for the FDR.  I notice also that limma controls for the
FDR, and wondered if/how the two analysis methods compared, both in
theory/philosophy and in practice.

Any comments would be appreciated

Mick