[BioC] Memory Requirments
Michael Barnes
Michael.Barnes at cchmc.org
Wed Jun 25 09:56:12 MEST 2003
What are the memory requirments when running Bioconductor's Affy
package? I have 38 U95a chips and when I try to process the data I
get:
expresso(Data,widget=TRUE)
background correction: rma
normalization: quantiles
PM/MM correction : pmonly
expression values: medianpolish
background correcting...Error: cannot allocate vector of size 83200 Kb
In addition: Warning message:
Reached total allocation of 1024Mb: see help(memory.size)
Is this saying that the vector size for each chip is 83Mb? Otherwise,
what is going on?
In addition, is this a reasonable analysis or is this duplicating the
functions used in rma as may be suggested in "Textual description of
Affy", pg 14? I don't quite understand from the vignette.
Michael Barnes
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