[BioC] Compilation problem installing Bioconductor (RGraphviz)

[Peter Baker (CMIS, St Lucia)]

Hi Toni

I have now installed graphviz: thanks!

However, after either source or rpm install of graphviz, while I get a
lot less warnings it still appears to crash at the same spot in
comilation.

Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
Rgraphviz.c:511: (Each undeclared identifier is reported only once
Rgraphviz.c:511: for each function it appears in.)
make: *** [Rgraphviz.o] Error 1
ERROR: compilation failed for package 'Rgraphviz'

Is there an easy way to drop this package out of the install?

Thanks

Cheers
Peter

On Wed, 18 Jun 2003 rossini at blindglobe.net wrote:

>
>Have you installed  graphviz (a recent version)?
>
>
>"Peter Baker (CMIS, St Lucia)" <Peter.Baker at csiro.au> writes:
>
>> Hi 
>>
>> Has anyone had this problem installing BioConductor on linux (RH 9.0)
>> and R 1.7.1?
>> many warnings deleted
>>
>> Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
>> make: *** [Rgraphviz.o] Error 1
>> ERROR: compilation failed for package 'Rgraphviz'
>>
>> Details of system
>> -----------------
>> ** Redhat 9.0 all rpms updated
>>
>> $ uname -a
>> Linux hostname_here 2.4.20-18.9smp #1 SMP Thu May 29 06:55:05 EDT 2003 i686 i686 i386 GNU/Linux
>> $ gcc --version
>> gcc (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)
>>
>>
>> ** R 1.7.1 built from source:
>>> version
>>          _
>> platform i686-pc-linux-gnu
>> arch     i686
>> os       linux-gnu
>> system   i686, linux-gnu
>> status
>> major    1
>> minor    7.1
>> year     2003
>> month    06
>> day      16
>> language R
>>
>>
>>
>> -- 
>> Dr Peter Baker, Statistician (Bioinformatics/Genetics),
>> CSIRO Mathematical & Information Sciences, Queensland Bioscience Precinct
>> 306 Carmody Road, St Lucia Qld 4067.   Australia. 
>> Email: <Peter.Baker at csiro.au>  
>> WWW: http://www.cmis.csiro.au/Peter.Baker/
>> Phone:+61 7 3214 2210   Fax:+61 7 3214 2900