[BioC] Compilation problem installing Bioconductor (RGraphviz)

[A.J. Rossini]

Have you installed  graphviz (a recent version)?


"Peter Baker (CMIS, St Lucia)" <Peter.Baker at csiro.au> writes:

> Hi 
>
> Has anyone had this problem installing BioConductor on linux (RH 9.0)
> and R 1.7.1?
>
> I just grabbed the source tarball because I want to put it on a few
> machines. It worked fine until it hit Rgraphviz.
>
> Could it be gcc 3.2.2?
>
> Regards
> Peter
>
>
> Installation problem
> ---------------------
>
> * Installing *source* package 'Rgraphviz' ...
> ** libs
> gcc -I/usr/local/lib/R/include `dotneato-config --cflags`  -I/usr/local/include -D__NO_MATH_INLINES -mieee-fp -Wall -fPIC  -g -O2 -c Rgraphviz.c -o Rgraphviz.o
> /bin/sh: line 1: dotneato-config: command not found
> In file included from Rgraphviz.c:1:
> common.h:19:20: render.h: No such file or directory
> common.h:20:19: graph.h: No such file or directory
> common.h:21:22: dotprocs.h: No such file or directory
> common.h:22:24: neatoprocs.h: No such file or directory
> common.h:23:20: adjust.h: No such file or directory
> In file included from Rgraphviz.c:1:
> common.h:37: parse error before '*' token
> common.h:38: parse error before '*' token
>
> many warnings deleted
>
> Rgraphviz.c:511: `twopi_nodesize' undeclared (first use in this function)
> make: *** [Rgraphviz.o] Error 1
> ERROR: compilation failed for package 'Rgraphviz'
>
> Details of system
> -----------------
> ** Redhat 9.0 all rpms updated
>
> $ uname -a
> Linux hostname_here 2.4.20-18.9smp #1 SMP Thu May 29 06:55:05 EDT 2003 i686 i686 i386 GNU/Linux
> $ gcc --version
> gcc (GCC) 3.2.2 20030222 (Red Hat Linux 3.2.2-5)
>
>
> ** R 1.7.1 built from source:
>> version
>          _
> platform i686-pc-linux-gnu
> arch     i686
> os       linux-gnu
> system   i686, linux-gnu
> status
> major    1
> minor    7.1
> year     2003
> month    06
> day      16
> language R
>
>
>
> -- 
> Dr Peter Baker, Statistician (Bioinformatics/Genetics),
> CSIRO Mathematical & Information Sciences, Queensland Bioscience Precinct
> 306 Carmody Road, St Lucia Qld 4067.   Australia. 
> Email: <Peter.Baker at csiro.au>  
> WWW: http://www.cmis.csiro.au/Peter.Baker/
> Phone:+61 7 3214 2210   Fax:+61 7 3214 2900
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
>

-- 
A.J. Rossini  /  rossini at u.washington.edu  /  rossini at scharp.org
http://software.biostat.washington.edu/ UNTIL IT MOVES IN JULY.
Biomedical and Health Informatics, University of Washington
Biostatistics, HVTN/SCHARP, Fred Hutchinson Cancer Research Center.
FHCRC: 206-667-7025 (fax=4812)|Voicemail is pretty sketchy/use Email 

CONFIDENTIALITY NOTICE: This e-mail message and any attachments ... {{dropped}}