[BioC] R package for SAM

[Holger Schwender]

Hi,
 
as promised a few weeks ago, here is the second version of the R package
siggenes that contains functions for performing both a SAM analysis and an
Empirical Bayes Analysis (only for the two class cases).
 
!!!!!! Please note that there is a patent pending for the SAM technology at
Stanford University. !!!!!!
 
 
Using a AMD Athlon 2000+ with 256MB RAM, the running times for a SAM
Analysis are (m: genes, B: permutations):
 
m=3226, B=100: ~13 sec
m=3226, B=1000: ~57 sec
m=7129, B=100: ~25 sec.
 
I have programmed these R routines for my diploma thesis that can be
downloaded from
 
http://de.geocities.com/holgerschw/thesis.pdf

The Application-Subchapters of the Chapters 5-8 contain examples of how the
functions can be applied to a data set.

Unfortunately, Yahoo limits the number of calls per day for a webpage. So if
you get an error message when trying to download my thesis, please try again
later.
 
Feel free to send me comments and questions about this package.
 
Greetings
Holger
 

-- 



-- 

-------------- next part --------------
A non-text attachment was scrubbed...
Name: siggenes_0.3-5.tar.gz
Type: application/x-gzip-compressed
Size: 30365 bytes
Desc: not available
Url : https://www.stat.math.ethz.ch/pipermail/bioconductor/attachments/20030617/889f5baf/siggenes_0.3-5.tar-0001.bin
-------------- next part --------------
A non-text attachment was scrubbed...
Name: siggenes_0.3-5.zip
Type: application/x-zip-compressed
Size: 73548 bytes
Desc: not available
Url : https://www.stat.math.ethz.ch/pipermail/bioconductor/attachments/20030617/889f5baf/siggenes_0.3-5-0001.bin