[BioC] problem with bioconductor install script

John Zhang jzhang at jimmy.harvard.edu
Fri Jun 13 12:58:25 MEST 2003


getBioC is an R script and is supposed to be run with R. After starting R, 
source("http://www.bioconductor.org/getBioC.R") will load the script into R and 
getBioC("all", "release") will get all the released packages from Bioconductor. 

>Date: Fri, 13 Jun 2003 16:42:30 +0100
>From: "Bela Tiwari" <btiwari at ceh.ac.uk>
>To: <bioconductor at stat.math.ethz.ch>
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>Subject: [BioC] problem with bioconductor install script
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>
>Hello,
>
>I have ran into problems trying to use the bioconductor install script
>as found on the web site: http://www.bioconductor.org/
>
>These are the errors I saw when running under the bash shell and zsh.
>
>
>Running under bash shell:
>
>sh-2.05a$ source getBioC.R
>sh: getBioC.R: line 55: syntax error near unexpected token `(l'
>sh: getBioC.R: line 55: `getBioC <- function (libName = "all", 
>relLevel = "release",'
>
>
>Running under zsh:
>
> source getBioC.R                                          [ 7:56]
>getBioC.R:55: number expected
>getBioC.R:62: no such file or directory: -
>getBioC.R:69: bad pattern: writeLines(paste(Running getBioC version
>,getBioCVersion,....\n,\n                     If you encounter problems,
>first make sure that\n,\n                     you are running the latest
>version of getBioC()\n,\n                     which can be found at:
>www.bioconductor.org/getBioC.R,\n                     \n\n,\n        
>            Please direct any concerns or questions to,\n               
>      bioconductor at stat.math.ethz.ch.\n,sep=))
>
>
>Just thought I'd let you know.
>
>Bela
>
>
>
>
>*************************
>Dr. Bela Tiwari
>Lead Bioinformatician
>
>CEH Oxford
>Mansfield Road
>Oxford, OX1 3SR
>01865 281975
>
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084



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