[BioC] Unable to Install on SUSE Linux 8.1

[michael watson (IAH-C)]

I HAVE hdf5:

IAHC-LINUX03:~ # rpm -q -a | grep hdf
hdf5-1.4.0-99

and it still fails with the same error

Any more suggestions? :-)

-----Original Message-----
From: James MacDonald
To: michael.watson at bbsrc.ac.uk; bioconductor at stat.math.ethz.ch
Sent: 7/24/03 3:01 PM
Subject: Re: [BioC] Unable to Install on SUSE Linux 8.1

You need hdf5

http://hdf.ncsa.uiuc.edu/HDF5/release/obtain5.html

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623

>>> "michael watson (IAH-C)" <michael.watson at bbsrc.ac.uk> 07/24/03
07:44AM >>>
Hi

I am running R version 1.7.1 on SUSE Linux 8.1

I downloaded the tarball and typed:

R CMD INSTALL Bioconductor_1.2.tar.gz

It got so far and then:

* Installing *source* package 'rhdf5' ...
checking for gcc... gcc
checking for C compiler default output... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for executable suffix...
checking for object suffix... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking for hdf5... yes
checking for H5Fopen in -lhdf5... no
checking for hdf5.h... no
checking hdf5 in /sw... failed
configure: error: please specify a valid hdf5 installation with
--with-hdf5=DIR
ERROR: configuration failed for package 'rhdf5'


Any help?  Thanks in advance :-D

Mick

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