[BioC] Error creating marrayInfo
kfbargad at lg.ehu.es
kfbargad at lg.ehu.es
Tue Jul 8 19:59:18 MEST 2003
Dear all,
first of all I apologise if this is a silly question.
I am using R version 1.7.1 Beta
I am trying to create objects of class marrayinfo following the
example on the marrayInfo documentation for a set of 6 cDNA chips.
> mydata.layout
Array layout: Object of class marrayLayout.
Total number of spots: 12288
Dimensions of grid matrix: 12 rows by 4 cols
Dimensions of spot matrices: 16 rows by 16 cols
Currently working with a subset of 12288 spots.
Control spots:
Notes on layout:
No Input File
I have created a text file called "samples.txt" following the format
of SwirlSample.txt as follows
# of slide Names experiment Cy3 experiment Cy5
1 sample1.txt control treated 1
2 sample2.txt control treated 1
3 sample3.txt control treated 1
4 sample4.txt control treated 2
5 sample5.txt control treated 2
6 sample6.txt control treated 2
and then tried to load it... and got the following error:
> mydata.samples<- read.marrayInfo(file.path(datadir, "samples.txt"))
Error in paste.default("Invalid object for slot \"", slotName, "\" in
class\"", :
Object "slotName" not found
Is there anything I am missing?
Thanks in advance
David
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