[BioC] Simple questions about p values adjustment in limma/multt est

[Yuk Fai Leung]

Hi,

Is the FDR assumed to be a certain percent (e.g. 5%) in the FDR adjustment
for p values? If so, is it possible to change it? Are these FDR adjusted
p-values the same as/similar to q-values in SAM procedure?

Thanks in advance!

Best regards,
Fai
________
Yuk Fai Leung
Bauer Center for Genomics Research
Harvard University
7 Divinity Avenue
Cambridge, MA 02138
Tel: 617-496-7134
Fax: 617-495-2196
email: yfleung at cgr.harvard.edu; yfleung at genomicshome.com
URL: http://genomicshome.com