[BioC] Installation of ath1121501cdf

[Justin Borevitz]

The manual installation worked fine for me yesterday on linux RH9 after I
had the same download error. This occurred when I tried to use justRMA() on
some ATH1 .cel files when the ath1121501cdf had not been installed
privously. Other packages (e.g. getBioC() ) do download fine on my system so
there may be a problem with the ath1121501cdf source link in this case.

Justin
http://naturalvariation.org 

-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of James MacDonald
Sent: Tuesday, August 19, 2003 5:46 AM
To: defle at psb.ugent.be; delphine.fleury at psb.ugent.be;
bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] Installation of ath1121501cdf

The simplest way to get the package is to use your browser to go to the
bioconductor website, download, and then use R CMD INSTALL <pkgname> (well,
second easiest way, but the easiest way is not working for you...).

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623

>>> defle at psb.ugent.be 08/19/03 07:25AM >>>
  Dear all,

 I tried to install the package ath1121501cdf without success. When
BioConductor needs the environment I got this error message:

Environment ath1121501cdf is not available.
This environment contains needed probe location information.
We will try to download and install the ath1121501cdf package.

Note: No specified download type, defaulting to Source
[1] "Attempting to download ath1121501cdf from BIOCcdf/"
Error in download.file(fileURL, destFile, mode = "wb", quiet = TRUE, method
= method) :
        unsupported URL scheme

 I tried several other things that didn't work. Could you give me hints?

   Thank you,
         Philippe
-- ==================================================================
Delphine Fleury
DEPARTMENT OF PLANT SYSTEMS BIOLOGY           Fax:32 (0)9 3313809
GHENT UNIVERSITY/VIB,    Technology Park 927, B-9052 Gent, Belgium
Vlaams Interuniversitair Instituut voor Biotechnologie         VIB
mailto:defle at psb.ugent.be                  http://www.psb.ugent.be 

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Justin
http://naturalvariation.org 

-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Jeff Gentry
Sent: Tuesday, August 19, 2003 8:15 AM
To: delphine.fleury at psb.ugent.be
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] Installation of ath1121501cdf

>  I tried to install the package ath1121501cdf without success. When
> BioConductor needs
> the environment I got this error message:

What are you doing to cause it to download the package?  I'm not sure what
it means when you say "When BioConductor needs the environment"

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