[BioC] heatmap{mva}

[Ivan Borozan]

Hi all,

In heatmap{mva} would it be possible to use (in
distfun=dist) a different distance measure from the one provided as
default (i.e. "euclidean")? Also would it be
possible to use (in hclustfun) a different agglomeration method from that
provided as default i.e. ("complete") ?

if i do:


heatmap(mattest,distfun=dist(method="manhattan"),hclustfun=hclust(method="average")
,scale=c("none"))   

i get

Error in as.integer(attr(d, "Size")) : Argument "d" is missing, with no
default


also if i do

heatmap(mattest,distfun=dist(mattest,method="manhattan"),hclustfun=hclust(dist(mattest),
method="average"),scale="none")

i get 

Error in heatmap(mattest, distfun = dist(mattest, method = "manhattan"),
: 
        couldn't find function "hclustfun"


best regards,
ivan