[BioC] gcrma question
Phguardiol at aol.com
Phguardiol at aol.com
Fri Aug 8 15:36:04 MEST 2003
Hi,
probably a question for Rafael...
I get an error message with gcrma...and some warning messages...? What can I
do with these ?
Thanks again
Philppe
R : Copyright 2003, The R Development Core Team
Version 1.7.1 (2003-06-16)
> library(gcrma)
Loading required package: affy
Welcome to Bioconductor
Vignettes contain introductory material. To view,
simply type: openVignette()
For details on reading vignettes, see
the openVignette help page.
Synching your local package management information ...
Packages which have been added/updated:
hgu133aprobe
Loading required package: MASS
> data <-ReadAffy()
> data2<-gcrma(data)
Loading required package: hgu133aprobe
Loading required package: matchprobes
background correction: gcrma
normalization: quantiles
PM/MM correction : pmonly
expression values: medianpolish
background correcting...Error in tmp[1, ] : incorrect number of dimensions
In addition: Warning messages:
1: NaNs produced in: log(x)
2: NaNs produced in: log(x)
3: NaNs produced in: log(x)
4: NaNs produced in: log(x)
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