[BioC] Problem with hgu133a

John Zhang jzhang at jimmy.harvard.edu
Mon Aug 4 10:38:13 MEST 2003


>There appears to be a problem with the Gene Ontology metadata in 
>hgu133a:
>
> > library(hgu133a)
> > get("GO:0000002", hgu133aGO2ALLPROBES)
>[1] "93062_at"    "161630_i_at" "96296_at"    "100040_at"
> > get("93062_at", hgu133aGO)
>Error in get(x, envir, mode, inherits) : variable "93062_at" was not 
>found


Yes, it seems that the GO2ALLPROBES environment for hgu133a was corrupted when 
the data package was built. I assume that the error is limimted as I have 
checked the hgu95av2, hgu133b, mgu74av2, and rgu34a chips and did not see any 
repetition.

We are in the process of building a new release of all the annotation data 
packages. The error will be corrected in the new release.

Thank you very much for reporting the error.



More information about the Bioconductor mailing list