[BioC] Trouble with affy version 1.2.1
Laurent Gautier
laurent@cbs.dtu.dk
Thu, 5 Sep 2002 08:47:03 +0200
The use of the 'devel' version of the package Biobase should keep R
happy.
Let us know if it not the case.
Hopin' it helps,
Laurent
On Wed, Sep 04, 2002 at 05:17:38PM -0400, Isaac Neuhaus wrote:
> I am running R 1.5.1 and I have installed the affy package version
> 1.2.1. When I start R and select library affy I get the following error.
> Any help?
>
> Isaac
>
> P.S. I have installed HDF5 and rhdf5.
> ---------------------------------------------------------------------------------------------
>
> > library(affy)
> Loading required package: Biobase
> Loading required package: methods
> Expanding the signature to include omitted arguments
> in definition: j = "missing"
>
> Attaching package `Biobase':
>
>
> The following object(s) are masked from package:base :
>
> split
>
> *************
> affy: development version (...this is usable...)
> *************
> demo(affy.tour) will eventually work and give an overview...
> *************
> If you have tkWidgets and rhdf5 installed, try
> expresso(widget=T, hdf5=T)
> for a real thrill...
> Loading required package: eda
> -->detecting normalization methods from naming convention
> -->detecting expression value methods from naming convention
> -->detecting background correction methods from naming convention
> -->initCdf
> -->initCel
> -->initCel.container
> Loading required package: rhdf5
>
> Attaching package `rhdf5':
>
>
> The following object(s) are masked from package:base :
>
> is.finite is.matrix
>
> -->initPPSet
> -->initPPSet.container
> -->initPlob
> Error in setMethod("abstract", "Plob", function(object)
> abstract(object@description), :
> No existing definition for function "abstract"
> Error in library(affy) : .First.lib failed
>
>
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