[BioC] Anyone Working with Imagene Data Files
Barry Henderson
barry.henderson@ribonomics.com
Tue, 25 Jun 2002 09:21:09 -0400
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I was hoping for a method for importing into BioConductor akin to how
marrayInput deals with GenPix and Spot data. From there I hope to
explore the general functionality of BioConductor for normalization and
ID of differentially expressed genes.
=20
Barry
=20
-----Original Message-----
From: Jess Mar [mailto:jcm@maths.uq.edu.au]=20
Sent: Monday, June 24, 2002 10:45 AM
To: Barry Henderson
Cc: bioconductor@stat.math.ethz.ch
Subject: RE: [BioC] Anyone Working with Imagene Data Files
=20
Sure, what do you want to do with them?
=20
-----Original Message-----
From: bioconductor-admin@stat.math.ethz.ch
[mailto:bioconductor-admin@stat.math.ethz.ch]On Behalf Of Barry
Henderson
Sent: Monday, 24 June 2002 11:54 PM
To: bioconductor@stat.math.ethz.ch
Subject: [BioC] Anyone Working with Imagene Data Files
Hi
=20
Is anyone working with Imagene data files? Imagene creates 2
data files, one for each laser making the data input somewhat more
complicated than for Spot or Genepix. =20
=20
Thanks
=20
Barry
=20
Barry S. Henderson, Ph.D.
Senior Scientist
Ribonomics, Inc.
barry.henderson@ribonomics.com
=20
=20
<http://www.ribonomics.com/>=20
=20
=20
=20
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<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'>I was hoping for a method for =
importing
into <span class=3DSpellE>BioConductor</span> akin to how <span =
class=3DSpellE>marrayInput</span>
deals with <span class=3DSpellE>GenPix</span> and Spot data. <span
style=3D'mso-spacerun:yes'> </span>From there I hope to explore the =
general
functionality of <span class=3DSpellE>BioConductor</span> for =
normalization and ID
of differentially expressed genes.<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'>Barry<o:p></o:p></span></font></p>
<p class=3DMsoNormal><font size=3D2 color=3Dnavy face=3DArial><span =
style=3D'font-size:
10.0pt;font-family:Arial;color:navy'><o:p> </o:p></span></font></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
face=3DTahoma><span
style=3D'font-size:10.0pt;font-family:Tahoma'>-----Original =
Message-----<br>
<b><span style=3D'font-weight:bold'>From:</span></b> Jess Mar
[mailto:jcm@maths.uq.edu.au] <br>
<b><span style=3D'font-weight:bold'>Sent:</span></b> =
</span></font><st1:date
Month=3D"6" Day=3D"24" Year=3D"2002"><font size=3D2 face=3DTahoma><span =
style=3D'font-size:
10.0pt;font-family:Tahoma'>Monday, June 24, =
2002</span></font></st1:date><font
size=3D2 face=3DTahoma><span =
style=3D'font-size:10.0pt;font-family:Tahoma'> </span></font><st1:time
Hour=3D"10" Minute=3D"45"><font size=3D2 face=3DTahoma><span =
style=3D'font-size:10.0pt;
font-family:Tahoma'>10:45 AM</span></font></st1:time><font size=3D2 =
face=3DTahoma><span
style=3D'font-size:10.0pt;font-family:Tahoma'><br>
<b><span style=3D'font-weight:bold'>To:</span></b> Barry Henderson<br>
<b><span style=3D'font-weight:bold'>Cc:</span></b> =
bioconductor@stat.math.ethz.ch<br>
<b><span style=3D'font-weight:bold'>Subject:</span></b> RE: [BioC] =
Anyone Working
with Imagene Data Files</span></font></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D3 =
face=3D"Times New Roman"><span
style=3D'font-size:12.0pt'><o:p> </o:p></span></font></p>
<div>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
color=3Dblue face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial;color:blue'>Sure, what do =
you want to
do with them?</span></font><o:p></o:p></p>
</div>
<div>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D3 =
face=3D"Times New Roman"><span
style=3D'font-size:12.0pt'> <o:p></o:p></span></font></p>
</div>
<blockquote =
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<p class=3DMsoNormal =
style=3D'mso-margin-top-alt:0in;margin-right:0in;margin-bottom:
12.0pt;margin-left:.5in'><font size=3D2 face=3DTahoma><span =
style=3D'font-size:10.0pt;
font-family:Tahoma'>-----Original Message-----<br>
<b><span style=3D'font-weight:bold'>From:</span></b>
bioconductor-admin@stat.math.ethz.ch
[mailto:bioconductor-admin@stat.math.ethz.ch]<b><span =
style=3D'font-weight:bold'>On
Behalf Of </span></b>Barry Henderson<br>
<b><span style=3D'font-weight:bold'>Sent:</span></b> Monday, 24 June =
2002 11:54
PM<br>
<b><span style=3D'font-weight:bold'>To:</span></b> =
bioconductor@stat.math.ethz.ch<br>
<b><span style=3D'font-weight:bold'>Subject:</span></b> [BioC] Anyone =
Working
with Imagene Data Files</span></font><o:p></o:p></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>Hi<o:p></o:p></span></font><=
/p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'><o:p> </o:p></span></fo=
nt></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>Is anyone working with =
Imagene data
files?<span style=3D'mso-spacerun:yes'> </span>Imagene creates 2 =
data files, one
for each laser making the data input somewhat more complicated than for =
Spot or
Genepix.<span style=3D'mso-spacerun:yes'> =
</span><o:p></o:p></span></font></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'><o:p> </o:p></span></fo=
nt></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>Thanks<o:p></o:p></span></fo=
nt></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
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style=3D'font-size:10.0pt;font-family:Arial'><o:p> </o:p></span></fo=
nt></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
face=3DArial><span
style=3D'font-size:10.0pt;font-family:Arial'>Barry<o:p></o:p></span></fon=
t></p>
<p class=3DMsoNormal style=3D'margin-left:.5in'><font size=3D2 =
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style=3D'font-size:10.0pt;font-family:Arial'><o:p> </o:p></span></fo=
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=
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column;mso-height-rule:exactly'><strong><b><font size=3D3 =
face=3D"Times New Roman"><span
style=3D'font-size:12.0pt;mso-no-proof:yes'>Barry S. Henderson, =
Ph.D.</span></font></b></strong><font
size=3D2 face=3DArial><span =
style=3D'font-size:10.0pt;font-family:Arial;mso-no-proof:
yes'><br>
<i><span style=3D'font-style:italic'>Senior Scientist<br>
Ribonomics, Inc.<br>
<a =
href=3D"mailto:barry.henderson@ribonomics.com">barry.henderson@ribonomics=
.com</a></span></i></span></font><span
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height=3D78 id=3D"_x0000_i1025" =
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