Hi everyone,
I am doing NGS analysis using bam files.I have counted reads in 3'utr region using 
utr=threeUTRsByTranscript(txdb,use.names=FALSE)
countsUTR <- countOverlaps(utr,reads)
I have got the transcript level counts from this.How can I get the gene level counts??It might sound silly but Does anybody have an idea on what type of anaylses we can do from this countsUTR ?
Thanks,Rohan
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