On Tue, Sep 13, 2011 at 4:59 PM, wang peter <wng.peter@gmail.com> wrote:

> the pairwiseAlignment() function return a
> PairwiseAlignedXStringSet
>
> how to export it to a file
>
>
What do you mean by export?  You can always use save() to retain the image
of the R data object returned.  Restore to
R using load().

If you want to process the results as strings, use as() to coerce to
character.  look carefully at the documentation for
class?PairwiseAlignedXStringSet, it is quite thorough.


> thx
> shan gao
>
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