Hello,

As you advise me, I installed R version 2.14 but I can't use the DEXSeq
library: package "‘DEXSeq’ is not available (for R Under development)"... Do
you know why?
Thanks,
Jane


>R.2.14

R Under development (unstable) (2011-07-24 r56492)
Copyright (C) 2011 The R Foundation for Statistical Computing
ISBN 3-900051-07-0
Platform: x86_64-unknown-linux-gnu (64-bit)

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> install.packages("DEXSeq")
--- SVP sélectionner un miroir CRAN pour cette session ---
CRAN mirror

 1: Argentina (La Plata)      2: Argentina (Mendoza)
 3: Australia (Canberra)      4: Australia (Melbourne)
 5: Austria                   6: Belgium
 7: Brazil (PR)               8: Brazil (RJ)
 9: Brazil (SP 1)            10: Brazil (SP 2)
11: Canada (BC)              12: Canada (NS)
13: Canada (ON)              14: Canada (QC 1)
15: Canada (QC 2)            16: Chile
17: China (Beijing 1)        18: China (Beijing 2)
19: China (Hefei)            20: China (Hong Kong)
21: China (Xiamen)           22: Colombia (Bogota)
23: Colombia (Cali)          24: Denmark
25: France (Toulouse)        26: France (Lyon 1)
27: France (Lyon 2)          28: Germany (Berlin)
29: Germany (Goettingen)     30: Germany (Muenchen)
31: Germany (Wiesbaden)      32: Greece
33: Indonesia                34: Iran
35: Ireland                  36: Italy (Milano)
37: Italy (Padua)            38: Italy (Palermo)
39: Japan (Hyogo)            40: Japan (Tsukuba)
41: Korea                    42: Mexico (Mexico City)
43: Mexico (Texcoco)         44: Netherlands (Amsterdam)
45: Netherlands (Utrecht)    46: New Zealand
47: Norway                   48: Philippines
49: Poland (Gdansk)          50: Poland (Oswiecim)
51: Poland (Wroclaw)         52: Russia
53: Singapore                54: Slovakia 1
55: Slovakia 2               56: South Africa
57: Spain (Madrid)           58: Sweden
59: Switzerland              60: Taiwan (Taichung)
61: Taiwan (Taipei 1)        62: Taiwan (Taipei 2)
63: Thailand                 64: UK (Bristol)
65: UK (London)              66: UK (St Andrews)
67: USA (AZ)                 68: USA (CA 1)
69: USA (CA 2)               70: USA (IA)
71: USA (MA)                 72: USA (MI)
73: USA (MO)                 74: USA (OH)
75: USA (OR)                 76: USA (PA 1)
77: USA (PA 2)               78: USA (TX 1)
79: USA (TX 2)               80: USA (WA 1)
81: USA (WA 2)

Sélection : 26
Message d'avis :
In getDependencies(pkgs, dependencies, available, lib) :
  package ‘DEXSeq’ is not available (for R Under development)
>



2011/7/24 Martin Morgan <mtmorgan@fhcrc.org>

> On 07/22/2011 07:40 AM, Jane Merlevede wrote:
>
>> Hello,
>>
>> I have used DESeq for gene differential expression analysis and I would
>> like
>> to use DEXSeq now for exon differential expression analysis.
>> The point is that the library DEXSeq seems to be available only in R
>> version
>> 2.14.0 (unstable). I am working on Linux (CentOS), with R version 2.13.0.
>> I
>> have not found this R version 2.14.0 for Linux... Finally, I cannot use
>> DEXSeq.
>> I would like to know if DEXSeq will be soon available in R version 2.13.0.
>> Or is the only solution to work with Windows?
>>
>
> As Sean mentions, this requires R-devel. It is not that difficult to build
> R from source on Linux, see sections 1 and 2 of
>
>  http://cran.fhcrc.org/doc/**manuals/R-admin.html<http://cran.fhcrc.org/doc/manuals/R-admin.html>
>
> The source code is available here
>
>  http://cran.fhcrc.org/sources.**html <http://cran.fhcrc.org/sources.html>
>
> you are looking for R-devel.tar.gz
>
> Martin
>
>
>> Thank you for your help,
>> Jane Merlevède
>>
>>        [[alternative HTML version deleted]]
>>
>>
>>
>>
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>>
>
>
> --
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>
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