I am analyzing differential expression with next gen sequencing data. I have
successfully gotten an output from the program containing the p-values
calculated for each gene, but I am not sure how to output the p-values
adjusted using the FDR method. From the edgeR manual, I can get a summary of
the number of genes that are significantly differentially expressed based on
adjusted p-values, but I do not know how to output the actual list of
adjusted p-values for my dataset. Can anyone help me with this?
I apologize if this question is naive, but I am a novice with R. Thanks in
advance!
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