Has anyone worked with trimLRPatterns function in the ShortRead library for
adaptor trimming?
What is the best way to export the trimmed reads in a fasta/fastq/text file?
I have a large 5,000,000 line fastq file with 50bp reads as input.
I have tried write.table as well as writeFASTA but nothing seems to be
working.
Hence, I would appreciate if somebody could help me out as I am novice in
the world of R/Bioconductor.

Thanks
-Jess

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