Trying to duplicate the example in the goseq vignette:

> table.summary = read.table("Li_sum.txt", sep = "\t", stringsAsFactors = FALSE, header = TRUE)
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") :
  cannot open file 'Li_sum.txt': No such file or directory
> sessionInfo()
R version 2.10.1 Patched (2010-01-25 r51042) 
x86_64-apple-darwin9.8.0 
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     
other attached packages:
[1] mgcv_1.6-1     edgeR_1.4.7    goseq_0.1.5    BiasedUrn_1.03
loaded via a namespace (and not attached):
[1] grid_2.10.1        lattice_0.18-3     limma_3.2.1        Matrix_0.999375-33 nlme_3.1-96        tools_2.10.1      
> 

Thanks for your help



      
	[[alternative HTML version deleted]]

