thanks!

I will have a look at them!

bests, jo

On Mon, Mar 1, 2010 at 2:25 PM, Martin Morgan <mtmorgan@fhcrc.org> wrote:

> On 03/01/2010 12:40 AM, Johannes Rainer wrote:
> > dear all,
> >
> > I'm just wondering if anybody has already implemented a ChIP-seq peak
> > detection algorithm (like MACS, PeakSeq...) or plans to do so.
>
> See http://bioconductor.org/packages/release/Software.html and search
> for chipseq, e.g., chipseq, ChIPseqR implement peak detection algorithms
> (though not MACS or PeakSeq; approximations of these algorithms are not
> difficult to implement using IRanges / Biostrings / ShortRead
> infrastructure).
>
> Martin
>
> >
> > bests, jo
> >
>
>
> --
> Martin Morgan
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
>
> Location: Arnold Building M1 B861
> Phone: (206) 667-2793
>



-- 
Johannes Rainer, PhD
Bioinformatics Group,
Division Molecular Pathophysiology,
Biocenter, Medical University Innsbruck,
Fritz-Pregl-Str 3/IV, 6020 Innsbruck, Austria
and
Tyrolean Cancer Research Institute
Innrain 66, 6020 Innsbruck, Austria

Tel.:     +43 512 570485 13
Email:  johannes.rainer@i-med.ac.at
           johannes.rainer@tcri.at
URL:   http://bioinfo.i-med.ac.at

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