# test using PE data with and without all the info
aln.PE<-readAligned(".","test_PE_export.txt.gz",type="SolexaExport")
aln.PE.c<-readAligned(".","test_PE_export.txt.gz",type="SolexaExport",complete=TRUE)

# test using SE data with and without all the info
aln.SE<-readAligned(".","test_SE_export.txt.gz",type="SolexaExport")
aln.SE.c<-readAligned(".","test_SE_export.txt.gz",type="SolexaExport",complete=TRUE)

# test using both data sets
aln.all<-readAligned(".","export.txt.gz",type="SolexaExport")
aln.all.c<-readAligned(".","export.txt.gz",type="SolexaExport",complete=TRUE)