On Tue, Feb 23, 2010 at 11:18 AM, Fuad Gwadry <fuad_gwadry@hotmail.com>wrote:

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> Hi
>
> The geneMouse data set in the chipseq package does not seem to be available
> anymore. I am using chipseq version 3.2.
> I was wondering if someone can make it available.
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>
It's available from the GenomicFeatures framework. You'll need the
GenomicFeatures.Mmusculus.UCSC.mm9 package. Be aware though that it's under
major construction.

Michael

Thanks,
>
> Fuad
>
> > sessionInfo()
> R version 2.11.0 Under development (unstable) (2010-01-19 r50998)
> i686-pc-linux-gnu
>
> locale:
>  [1] LC_CTYPE=en_CA.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_CA.UTF-8        LC_COLLATE=en_CA.UTF-8
>  [5] LC_MONETARY=C              LC_MESSAGES=en_CA.UTF-8
>  [7] LC_PAPER=en_CA.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] chipseq_0.3.2      ShortRead_1.5.10   lattice_0.18-3
> BSgenome_1.15.4
> [5] Biostrings_2.15.18 IRanges_1.5.29
>
> loaded via a namespace (and not attached):
> [1] Biobase_2.7.3 grid_2.11.0   hwriter_1.1
>
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