Hi All

 

I am starting a new thread since the old issues I believe have been
taken care of. I am trying to install dev version of Rsamtools and
following is what I have done till now.    -Abhi

 

 

1.       R devel install

2.       BioC devel install ver 2.5.8

 

..CMD:- Rdev CMD INSTALL --clean Rsamtools/

 

****Error:*****

Warning in .completeClassSlots(ClassDef, where) :

  undefined slot classes in definition of "Alignments0":
gapped_ranges(class "GappedRanges")

Error in setValidity2("Alignments0", .valid.Alignments0, where =
asNamespace("Rsamtools")) : 

  unused argument(s) (where = asNamespace("Rsamtools"))

Error : unable to load R code in package 'Rsamtools'

ERROR: lazy loading failed for package 'Rsamtools'

* removing
'/local/projects/grc/devel/apratap/softwares/R-devel/R-rc/lib64/R/librar
y/Rsamtools'

 

========

 

 

sessionInfo()

R version 2.10.1 RC (2009-12-06 r50688) 

x86_64-unknown-linux-gnu 

 

locale:

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              

 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    

 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   

 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 

 [9] LC_ADDRESS=C               LC_TELEPHONE=C            

[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

 

attached base packages:

[1] stats     graphics  grDevices utils     datasets  methods   base   

 

 


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