On Tue, Nov 17, 2009 at 9:32 PM, Dario Strbenac <D.Strbenac@garvan.org.au>wrote:

> Hello,
>
> Does anyone have suggestions as to why this never finishes running ?
>
>
Perhaps network issues? It seems to work here... can you download other
tracks or is it just this one?

Michael


> session <- browserSession("UCSC")
>  ...            ...
> q2 <- ucscTableQuery(session, "all_mrna", GenomicRanges(genome = "hg18"))
> mrna <- getTable(q2)
>
> The sessionInfo() is
> R version 2.10.0 (2009-10-26)
> x86_64-pc-linux-gnu
>
> locale:
>  [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8
>  [5] LC_MONETARY=C              LC_MESSAGES=en_AU.UTF-8
>  [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] rtracklayer_1.6.0 RCurl_1.3-0       bitops_1.0-4.1
>
> loaded via a namespace (and not attached):
> [1] Biobase_2.6.0     Biostrings_2.14.5 BSgenome_1.14.1   IRanges_1.4.6
> [5] tools_2.10.0      XML_2.6-0
>
> Thanks,
>       Dario.
>
> _______________________________________________
> Bioc-sig-sequencing mailing list
> Bioc-sig-sequencing@r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
>

	[[alternative HTML version deleted]]

