Nicolas, Vince,

 

Thanks a lot for your kind help. I have got it and will give it a try.

 

Xiwei

 

________________________________

From: Vincent Carey [mailto:stvjc@channing.harvard.edu] 
Sent: Thursday, April 23, 2009 9:32 AM
To: Nicolas Delhomme
Cc: Wu, Xiwei; Bioc-sig-sequencing@r-project.org
Subject: Re: [Bioc-sig-seq] chipseq package





On Thu, Apr 23, 2009 at 12:12 PM, Nicolas Delhomme <delhomme@embl.de>
wrote:

Hi Xiwei,

This is from the list archive:

> Laurent is correct. You can find the chipseq package at
>
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chipseq
>
> Note that this package is currently considered to be experimental and
function interfaces and behavior are subject to change beyond what would
normally be excepted for a released BioC package.


in case it is not completely clear, you would use subversion to retrieve
this -- it does not
seem to be accessible via biocLite

svn co
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/chipseq 

you will be challenged for credentials, and they are on the website;
contact me off line if you cannot find




	
	Cheers,
	
	N.
	
	---------------------------------------------------------------
	Nicolas Delhomme
	
	High Throughput Functional Genomics Center
	
	European Molecular Biology Laboratory
	
	Tel: +49 6221 387 8426
	Email: nicolas.delhomme@embl.de
	Meyerhofstrasse 1 - Postfach 10.2209
	69102 Heidelberg, Germany
	---------------------------------------------------------------

	
	
	
	
	On 23 Apr 2009, at 17:03, Wu, Xiwei wrote:

	Dear all,
	
	I was looking at some of the recent workshops related to
chip-seq data analysis. It looks like a package called "chipseq" is
mentioned and used in the workshops. However, I can not find the package
in Bioconductor site. Could someone point me to where to get that
package? Thanks in advance.
	
	Xiwei
	
	
	
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-- 
Vincent Carey, PhD
Biostatistics, Channing Lab
617 525 2265


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