On Wed, Apr 22, 2009 at 9:30 PM, <ig2ar-saf2@yahoo.co.uk> wrote:

>
> Hello,
>
> Installing BioC packages is very easy. You just do, for instance
>
>
> source("http://bioconductor.org/biocLite.R";)
> biocLite("ShortRead")
>
> How do you install Rmpi?
>
> I am running Fedora linux and there seems not to exist an Rmpi rpm package
> for x86_64.


First, have you installed and MPI library?

Assuming that you have an mpicc (from one of the MPI libraries), at the
linux command line (as root or using sudo, if installing for system user):

CC=mpicc R CMD INSTALL Rmpi_0.5.7.tar.gz

where RmpiXXX.tar.gz is downloaded from CRAN.  Emails like these might best
go to the r-sig-hpc list.

Hope that helps.

Sean

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