[Bioc-sig-seq] Re(surrecting): Rsamtools countBam labeling

[Cook, Malcolm]

Matt et. al.,

I wonder if a satisfactory resolution to the issue of "the order changes between the GRanges object and the countBam data.frame

http://www.mail-archive.com/bioc-sig-sequencing@r-project.org/msg01144.html

I am presented with the same issue and poised to tackle it but wondr if a generic solution emerged from you inquiries & efforts.

Thanks,

Malcolm Cook
Stowers Institute for Medical Research -  Bioinformatics
Kansas City, Missouri  USA