[Bioc-sig-seq] Bioconductor approach to Circos

[Ivan Gregoretti]

Hello Sean, Michael and everyone,

Too bad there is no counterpart of Circos in R yet.

Indeed, Circos provides many options. I use it quite often but
preparing the configuration file takes much more time than an equally
complex lattice graph.

Thank you,

Ivan


Ivan Gregoretti, PhD
National Institute of Diabetes and Digestive and Kidney Diseases
National Institutes of Health
5 Memorial Dr, Building 5, Room 205.
Bethesda, MD 20892. USA.
Phone: 1-301-496-1016 and 1-301-496-1592
Fax: 1-301-496-9878



On Tue, Mar 8, 2011 at 2:50 PM, Michael Lawrence
<lawrence.michael at gene.com> wrote:
> You can check out Tengfei's visnab package. It's a package for interactive
> plotting of genomic data. It depends on the R/Qt infrastructure, and only
> really works on Linux and Mac right now. But it does have a nice looking
> circular view.
>
> Grab it here:
> https://github.com/tengfei/VisNAB/
>
> Hopefully in next release of Bioc.
>
> Michael
>
>
> On Tue, Mar 8, 2011 at 11:38 AM, Ivan Gregoretti <ivangreg at gmail.com> wrote:
>>
>> Hello everyone,
>>
>> I there any R package or function designed to draw circular graphics à
>> la Circos?
>>
>> For very fancy examples, see
>> http://mkweb.bcgsc.ca/circos/images/
>>
>> Thank you,
>>
>> Ivan
>>
>>
>> Ivan Gregoretti, PhD
>> National Institute of Diabetes and Digestive and Kidney Diseases
>> National Institutes of Health
>> 5 Memorial Dr, Building 5, Room 205.
>> Bethesda, MD 20892. USA.
>> Phone: 1-301-496-1016 and 1-301-496-1592
>> Fax: 1-301-496-9878
>>
>> _______________________________________________
>> Bioc-sig-sequencing mailing list
>> Bioc-sig-sequencing at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
>
>