[Bioc-sig-seq] trimLRPatterns for wild card

[Kunbin Qu]

Hi, all,

Does trimLRPatterns function take wild card N? When I tested it, it does not seem to work. Is there a way to do that? Thanks.

-Kunbin


> a<-DNAString("AAACCCCTTTCCTTT")
> p<-DNAString("CCNNT")
> trimLRPatterns(Rpattern=p, subject=a)
  15-letter "DNAString" instance
seq: AAACCCCTTTCCTTT
> p<-DNAString("CCTTT")
> trimLRPatterns(Rpattern=p, subject=a)
  10-letter "DNAString" instance
seq: AAACCCCTTT
>

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