[Bioc-sig-seq] rtracklayer::import

Ivan Gregoretti ivangreg at gmail.com
Thu Sep 2 20:14:04 CEST 2010


Hello Bioc team,

Would it be possible to improve the efficiency of import()?

1) perhaps reading data by chunks.

2) perhaps reading in only selected fields such as strand or score.

The latest improvement allowing direct import()ing into a GRanges
object is excellent. No suprisingly, I am back for more!

Thank you,

Ivan

Ivan Gregoretti, PhD
National Institute of Diabetes and Digestive and Kidney Diseases
National Institutes of Health
5 Memorial Dr, Building 5, Room 205.
Bethesda, MD 20892. USA.
Phone: 1-301-496-1016 and 1-301-496-1592
Fax: 1-301-496-9878



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