[Bioc-sig-seq] Resizing a GRanges object with elements on the "*" strand

Steve Lianoglou mailinglist.honeypot at gmail.com
Fri Oct 1 19:40:47 CEST 2010

On Fri, Oct 1, 2010 at 1:20 PM, Michael Lawrence
<lawrence.michael at gene.com> wrote:
> In theory we should be able to back-port this change. I have no idea why it
> is not making it into the release. It was committed after the circular stuff
> (which breaks serialized object compatibility), but does not depend on it.

I changed:

1. the type of x from "GenomicRanges" to "GRanges" (probably not necessary)
2. and also maybe not necessary, but:
 x <- clone(x, ranges = ranges)
 x <- initialize(x, ranges=ranges)

Otherwise it works as advertised, otherwise.

Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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