[Bioc-sig-seq] Question about sbanBam() with AB SOLID data

ivan.borozan at utoronto.ca ivan.borozan at utoronto.ca
Thu Nov 11 20:38:25 CET 2010

Hello list,

Can scanBam() be used with AB SOLID data (bam files) so that it can  
return sequences in color space and with the right lengths?

My read sequences are 50 bp in lengths however scanBam() is returning  
sequences of length between 25 - 27 (they seem to be clipped) and  
which are not in color space.

Many thanks for any suggestions,


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