[Bioc-sig-seq] annotatePeakInBatch feature request

[Zhu, Julie]

Hi Dario,

If possible, could you please share your insight on the use case for
distinguishing peaks at + strand from those at - strand? Thanks!

I have several deadlines coming next week. I will try to work on the new
feature the week after. Thanks!

Best regards,

Julie


*******************************************
Lihua Julie Zhu, Ph.D
Research Associate Professor
Program in Gene Function and Expression
Program in Molecular Medicine
University of Massachusetts Medical School
364 Plantation Street, Room 613
Worcester, MA 01605
508-856-5256
http://www.umassmed.edu/pgfe/faculty/zhu.cfm



On 6/3/10 11:26 PM, "Dario Strbenac" <D.Strbenac at garvan.org.au> wrote:

> Hi,
> 
> Would it be possible to have an extra choice for the PeakLocForDistance option
> of the annotatePeakInBatch function ? A choice that uses the start if the peak
> is on the + strand, and end if the peak is on the - strand (if the peaks have
> a strand) ?
> 
> --------------------------------------
> Dario Strbenac
> Research Assistant
> Cancer Epigenetics
> Garvan Institute of Medical Research
> Darlinghurst NSW 2010
> Australia
> 
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