[Bioc-sig-seq] Rsamtools problem

[Steve Lianoglou]

Hi,

On Wed, Feb 17, 2010 at 2:07 PM, Droit Arnaud <Arnaud.Droit at ircm.qc.ca> wrote:
> Hi Patrick,
>
> Thanks for your reply.
> I have install the latest Biostrings (2.15.21), rtracklayer (1.7.4), ShortRead (1.5.15), IRanges (1.5.46), BSgenome (1.15.4) and Biostrings (2.15.21) packages and I sill received the same error message when I tried to install Rsamtools.
> I have also tried it with the packages directly from the SVN account (rtracklayer 1.7.9,....) but there is still too many error that appeared.
>
> If you have any other ideas (platform, version, 64 bit ...), please let me know?

That's weird ... just this morning I pulled recent versions of
IRanges, Biostrings, BSgenome, ShortRead, Rsamtools, and rtracklayer
from SVN. They are at revision 44736.

I did an `R CMD INSTALL --clean` of all of those packages and they
seem to install fine (I haven't really used them today, though).

For what it's worth, I do get that ''.__C__file', '.__C__connection''
errors from the GenomicFeatures package. I don't actually use that
package, though, and I didn't see it mentioned in your email, but I
thought I'd include that so you don't feel like you're going crazy, or
something :-)

Also, I'm on OS X.6.2 and using R version 2.11.0 Under development
(unstable) (2010-02-15 r51142).

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact