[Bioc-sig-seq] Coverage for RangeList?

[Jane Landolin]

Ah, ok, thanks for all the comments.  My version of IRanges is not up
to date and doesn't have the width parameter.  I'm upgrading and will
let you know if I still have issues.


Right now, I am organizing the chromosomes using the "splitter"
parameter in RangedData(), and get an "unused arguments" error when I
call coverage() with a "width" parameter:

ir<-IRanges(start=as.numeric(rrna_k[,"start"]),end=as.numeric(rrna_k[,"stop"]))
seq<-rrna_k[,"seq"]
strand<-rrna_k[,"strand"]
chr_length<-rrna_lengths[rownames(rrna_k)]
rrna_k_rd<-RangedData(ir,seq,strand,chr_length,splitter=rrna_k[,"chr"])



> lapply(ranges(rrna_k_rd),coverage,width=rrna_lengths)
Error in .local(x, start, end, ...) :
  unused argument(s) (width = c(135, 135,1130,1140,


Jane