[Bioc-sig-seq] Rsamtools scanBam output to Bam

burak kutlu burak_kutlu at yahoo.com
Mon Apr 12 18:35:02 CEST 2010


Hi 
Is there a way to create a SAM file from the output of scanBam from Rsamtools?
The reason we would like to do is use IGV to visualize a subset of regions in a large Bam file using load2newIGV function from SRAdb.
For this, we will need to put the list structure back to SAM format.
Please let me know if this is enough to give you an idea what we are trying to achieve.
Thanks in advance
-burak



More information about the Bioc-sig-sequencing mailing list