[Bioc-sig-seq] ShortRead and Solexa GA(II)

Martin Morgan mtmorgan at fhcrc.org
Wed Sep 30 21:25:11 CEST 2009

Hi Matthew --

Matthew McCormack wrote:
>  Solexa's Genome anlyzer II now uses 100 tiles per lane, and I was
> wondering if this would have any affect when using ShortRead in which I
> noticed the examples provided in the pdf were with 300 tiles per lane.

This only matters for generation of the per tile elements of the qa
report, and ShortRead uses a simple heuristic to guess appropriately.
There should not be a problem, but let me know if there is.


> Matthew McCormack
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Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793

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