[Bioc-sig-seq] gdapply, coverage, and widths for all chromosomes

Chris Seidel seidel at phaget4.org
Mon Oct 19 19:25:23 CEST 2009


In using gdapply to get coverage over all chromosomes of a
GenomeDataList object:

cov <- gdapply(extendedReads, coverage)

how do you supply the "width" argument to coverage? When I try handing
it a vector of chromosome lengths, it complains that it needs a single
value.

-Chris



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