[Bioc-sig-seq] Generating heatmaps in R from RNAseq using solexa

[Sean Davis]

Assuming that you have counts per gene, you can use any number of heatmap
functions.  A quick search of the bioconductor archives will turn up many
examples/possibilities.  If you are asking about how to get counts per gene
and do analyses looking for differential expression, then you might want to
give a bit more detail of your experiment.

Sean

On Tue, Mar 3, 2009 at 6:43 PM, Carl Yeoman <cjyeoman at illinois.edu> wrote:

>   Hi,
>
> I was hoping someone might point me in the direction of the best package
> (in R) for generating heatmaps from my solexa analysis of a transcriptome.
> Quantitative and statistical analysis were performed using ShortRead.
>
> Carl
>
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