[Bioc-sig-seq] Genominator

[Michael Muratet]

On Dec 22, 2009, at 4:58 PM, Patrick Aboyoun wrote:

> Michael,
> Bioconductor packages are coupled with a particular version of R.  
> Genominator was introduced into Bioconductor in BioC 2.5 to be used  
> with R 2.10. To use the Genominator package, update your version of  
> R to 2.10.1 and use the biocLite call you specified below.
>
>
> Cheers,
> Patrick
>
Thanks guys. It was operator error (old version)

Merry Christmas.

Mike
>
> Michael Muratet wrote:
>> Greetings
>>
>> I am trying to install Genominator (and GenomeGraphs). I tried the  
>> usual:
>>
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("Genominator")
>> and it returned:
>> Running biocinstall version 2.3.14 with R version 2.8.0 Your  
>> version of R requires version 2.3 of Bioconductor.
>> Warning message: package ‘Genominator’ is not available
>> So I tried downloading the tarball from the website and R CMD  
>> INSTALL Genominator_1.0.2.tar.gz
>> and got:
>> {loading and cranking output} then
>> ERROR: Environment (text enclosed in {}) found in \title{...}.
>> The title must be plain text! ERROR: building help failed for  
>> package 'Genominator' ** Removing '/Library/Frameworks/R.framework/ 
>> Resources/library/Genominator'
>> I think maybe there's an issue with the package, but I'm willing to  
>> accept I fouled up somewhere. Anybody have any suggestions?
>> sysinfo:
>> sessionInfo() R version 2.8.0 (2008-10-20) i386-apple-darwin8.11.1  
>> locale: en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8  
>> attached base packages: [1] stats graphics grDevices utils datasets  
>> methods base loaded via a namespace (and not attached): [1]  
>> tools_2.8.0
>> Thanks
>> Mike
>>
>> Michael Muratet, Ph.D.
>> Senior Scientist
>> HudsonAlpha Institute for Biotechnology
>> mmuratet at hudsonalpha.org
>> (256) 327-0473 (p)
>> (256) 327-0966 (f)
>>
>> Room 4005
>> 601 Genome Way
>> Huntsville, Alabama 35806
>>
>> _______________________________________________
>> Bioc-sig-sequencing mailing list
>> Bioc-sig-sequencing at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
>

Michael Muratet, Ph.D.
Senior Scientist
HudsonAlpha Institute for Biotechnology
mmuratet at hudsonalpha.org
(256) 327-0473 (p)
(256) 327-0966 (f)

Room 4005
601 Genome Way
Huntsville, Alabama 35806