[Bioc-sig-seq] Probs installing dev version of Rsamtools

Seth Falcon sfalcon at fhcrc.org
Wed Dec 9 00:57:29 CET 2009


On 12/8/09 3:29 PM, Pratap, Abhishek wrote:
> 1.       R devel install

It might help to describe what you did to install R devel.  It doesn't 
seem that you are using R-devel based on your sessionInfo which says:

 > sessionInfo()
 > R version 2.10.1 RC (2009-12-06 r50688)
 > x86_64-unknown-linux-gnu

You should get something more along the lines of:

     R version 2.11.0 Under development (unstable) (--)

> ..CMD:- Rdev CMD INSTALL --clean Rsamtools/

You will also want to be sure dependencies are already installed when 
installing from source in this fashion.  Looking at the DESCIPTION file 
in Rsamtools/ you might try:

   biocLite(c("IRanges", "Biostrings", "BSgenome"))

Then repeat what you tried for installing Rsamtools

+ seth

Seth Falcon
Program in Computational Biology | Fred Hutchinson Cancer Research Center

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