[Bioc-sig-seq] About trimming adaptor of Solexa short reads

[James W. MacDonald]

Dan Bolser wrote:
> 2009/4/27 James W. MacDonald <jmacdon at med.umich.edu>:
>> There is some older information from BioC2008 here (starting on page 12):
>>
>> http://www.bioconductor.org/workshops/2008/BioC2008/labs/PairwiseSequenceAlignments/Alignments.pdf
>>
>> Or you could search the Bioc-sig-seq listserv for newer information:
>>
>> http://www.google.com/search?hl=en&as_q=adapter&as_epq=&as_oq=&as_eq=&num=10&lr=&as_filetype=&ft=i&as_sitesearch=https%3A%2F%2Fstat.ethz.ch%2Fpipermail%2Fbioc-sig-sequencing%2F&as_qdr=all&as_rights=&as_occt=any&cr=&as_nlo=&as_nhi=&safe=images
> 
> Is there a wiki where this info gets logged?

Unfortunately, no (or fortunately, if you are the person charged with 
updating the wiki). We have dabbled a bit with using a wiki to track 
information or certain long-running discussions, but it's like having a 
microwave at work - most people want to use it, but nobody has the time 
or inclination to keep it clean.

Fortunately there are many people who subscribe to the various BioC 
lists who are more than helpful, and our friend google is really good at 
finding their responses, given the correct search string. So we rely on 
the list archives as the primary store of information rather than a wiki.

Best,

Jim

> 
> 
>> Best,
>>
>> Jim
>>
>>
>> Xiang Xu wrote:
>>> Hello all,
>>>
>>> Is there someone can show me some software or tools for trimming the
>>> adaptors of Solexa short reads? Do you have any protocol for analysis
>>> sequencing data of gene expression and small RNA?
>>>
>>> Thanks in advance.
>>>
>>> Regards,
>>>
>>> Xiang Xu
>>>
>>>        [[alternative HTML version deleted]]
>>>
>>> _______________________________________________
>>> Bioc-sig-sequencing mailing list
>>> Bioc-sig-sequencing at r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
>> --
>> James W. MacDonald, M.S.
>> Biostatistician
>> Douglas Lab
>> University of Michigan
>> Department of Human Genetics
>> 5912 Buhl
>> 1241 E. Catherine St.
>> Ann Arbor MI 48109-5618
>> 734-615-7826
>>
>> _______________________________________________
>> Bioc-sig-sequencing mailing list
>> Bioc-sig-sequencing at r-project.org
>> https://stat.ethz.ch/mailman/listinfo/bioc-sig-sequencing
>>

-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826