[Bioc-sig-seq] [BioC] analysis ChIP-seq data

Martin Morgan mtmorgan at fhcrc.org
Tue Jun 10 20:40:21 CEST 2008

Hi Bodan --

"Bogdan Tanasa" <tanasa at gmail.com> writes:

> Hi everyone,
> I am in the process of analyzing a lot of ChIP-seq data and I am writing to ask
> if an analysis module becomes available for R/Bioconductor anytime soon.

Visit the bioc-sig-sequencing news group (Cc'd in the reply)


Current packages include Biostrings (for lots of string matching /
manipulation facilities) and ShortRead (for IO from ELAND or MAQ, for
instance, plus additional sorting, counting, and qa-related
functionality. There are posts in the bioc-sig-sequencing news group
about package use.

Maybe others will reply (to bioc-sig-sequencing) with additional
developments; I know people are working with and developing packages
for this data in R.


> Any information would be greatly appreciated. Thanks and best regards.
> Bogdan
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Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

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Phone: (206) 667-2793

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