Dear all,

My name is Kevin Rue-Albrecht and I am working to improve a package
currently in review by Bioconductor. I am blocked while trying to add the
final touch to the package.

I was wondering about the recommended way of inserting bibliographic
references in the body of the package vignette using R Studio to build
the source package.

I am developing the package using R Studio on a standard Linux Ubuntu 12.04
distribution. The package contains a Sweave vignette (.Rnw file) which
succesfully compiles on the Bioconductor package tracker with bits of R
code and bits of LaTeX.

So far, I have only found this page which confuses me for different reasons
(
http://texblog.org/2013/08/20/rknitr-automatic-bibliography-generation-with-biblatex-in-rstudio/
):

   - It refers to the knitr type of vignette, not the Sweave that I have
   used so far
   - At some point the person writes "tell RStudio where to find the .tex,
   .bib and .bst files"
      - In the minimal example, he seems to include the .bib file into the
      source of the vignette file. I probably should not do that with many
      references.

I haven't found the information in the "Writing R Extensions" page, the
Bioconductor pacakge guidelines or the archives of this mailing list.


   - Can anyone point me to a place where my question might be already
   answered that I haven't found yet?
   - Or can anyone tell me how to store the references (probably in a
   separate file), and how to refer to them in the .Rnw vignette file so that
   it compiles properly on the Bioconductor servers?


Many thanks in advance !

Best regards,
Kevin


-- 
Kévin RUE-ALBRECHT
Wellcome Trust Computational Infection Biology PhD Programme
University College Dublin
Ireland
http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en

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