On Thu, May 29, 2014 at 2:47 PM, Dan Tenenbaum <dtenenba@fhcrc.org> wrote:

> #!/bin/sh
>
> R_SCRIPT="suppressPackageStartupMessages(library(methods))"
> R_SCRIPT="$R_SCRIPT; suppressPackageStartupMessages(library(methods))"
> R_SCRIPT="$R_SCRIPT; suppressPackageStartupMessages(library(BiocCheck))"
> R_SCRIPT="$R_SCRIPT; BiocCheck:::.BiocCheckFromCommandLine()"
>
> echo "$R_SCRIPT" | $R_HOME/bin/R --vanilla --slave --args $*
>

Thanks

I think it would be great to address the Windows issue.  On a multi-user
system, I would expect a decent installation of R to not have lib/R/bin
writable. It would be great if the intervention is merely to copy over a
file and not modify it, especially when the package gets updated (and I
then have to do this manually for several versions of R)

Best,
Kasper

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