I am trying to re-create my git-svn bridges, but the website throws an
error when I do it.  Not sure why.  I am trying to let svn win.

Best,
Kasper


On Mon, May 12, 2014 at 1:41 PM, Hector Corrada Bravo <hcorrada@gmail.com>wrote:

> Another use case where this is useful is that newer packages may still need
> to use the 'devel' BioC branch as something of a 'release' branch since a
> natural release cycle is faster than the BioC cycle (I think of the BioC
> devel branch that way for some packages).
>
> This way the master branch on git can be the 'no guarantees' branch, and
> another branch on git is synchronized with the devel branch on svn.
>
>
> On Mon, May 12, 2014 at 1:26 PM, Dan Tenenbaum <dtenenba@fhcrc.org> wrote:
>
> >
> >
> > ----- Original Message -----
> > > From: "Henrik Bengtsson" <hb@biostat.ucsf.edu>
> > > To: "Moritz Gerstung" <mg14@sanger.ac.uk>
> > > Cc: bioc-devel@r-project.org, "Sean Davis" <sdavis2@mail.nih.gov>
> > > Sent: Monday, May 12, 2014 10:19:15 AM
> > > Subject: Re: [Bioc-devel] Bioconductor git-svn bridge is available
> > >
> > > On Mon, May 12, 2014 at 1:32 AM, Moritz Gerstung <mg14@sanger.ac.uk>
> > > wrote:
> > > > Hi all
> > > >
> > > > Following Kasper's idea from a couple of months ago: Would it be
> > > > possible to have the git-svn bridge synchronise a branch other
> > > > than master?
> > > >
> > > > If so, one could use the git subtree command,
> > > >
> > > > git subtree split -P minfi -b biocsvn
> > > >
> > > > to create a branch 'biocsvn' only containing minfi directory
> > > > [package]. This branch would then be synchronised over the git-svn
> > > > bridge. Changes in the biocsvn branch can be merged back into the
> > > > master branch and the correct directory with
> > > >
> > > > git subtree merge -P minfi biocsvn
> > > >
> > > > I would also fancy a directory structure as Kasper suggested, where
> > > > the actual R package is a subdirectory. This would allow for
> > > > placing extra files such as README.md or Makefile into the root
> > > > directory and other project related data which shouldn't go into
> > > > the package, but may be useful, in other directories. As a side
> > > > effect one can also screw up the git master branch without
> > > > breaking the devel repository.
> > >
> > > Just a FYI: Using .Rbuildignore you can still add Makefile and other
> > > files to the repository that won't go into the package
> > > build/install/check/distro/....  This works regardless of Subversion
> > > of Git.
> > >
> >
> >
> > Right. But if you wanted to structure your repo like this:
> >
> > - README
> > - package/
> >     DESCRIPTION
> >     etc
> > - otherstuff/
> >
> > where the actual R package is in the 'package' directory, then
> > .Rbuildignore would not help.
> >
> > This (I think) is what the original request was about.
> >
> > Dan
> >
> >
> >
> > > /Henrik
> > >
> > >
> > > >
> > > > I'm not a git guru, so maybe I'm missing something here, but it
> > > > seems feasible.
> > > >
> > > > Cheers,
> > > >
> > > > Moritz
> > > >
> > > > PS. Resent as it bounced from list before.
> > > >
> > > >
> > > > On 21 Feb 2014, at 17:00, Kasper Daniel Hansen
> > > > <kasperdanielhansen@gmail.com> wrote:
> > > >
> > > >> Thanks everyone, it was worth a question.
> > > >>
> > > >> Perhaps I will figure out how to use submodules.
> > > >>
> > > >> Kasper
> > > >>
> > > >>
> > > >> On Fri, Feb 21, 2014 at 11:45 AM, Dan Tenenbaum
> > > >> <dtenenba@fhcrc.org> wrote:
> > > >>
> > > >>>
> > > >>>
> > > >>> ----- Original Message -----
> > > >>>> From: "Sean Davis" <sdavis2@mail.nih.gov>
> > > >>>> To: "Kasper Daniel Hansen" <kasperdanielhansen@gmail.com>
> > > >>>> Cc: bioc-devel@r-project.org, "Dan Tenenbaum"
> > > >>>> <dtenenba@fhcrc.org>
> > > >>>> Sent: Friday, February 21, 2014 7:08:21 AM
> > > >>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is
> > > >>>> available
> > > >>>>
> > > >>>>
> > > >>>>
> > > >>>> I doubt this is possible given the atomic nature of a git
> > > >>>> repository.
> > > >>>> You might look at using a second git repository and including
> > > >>>> the
> > > >>>> minfi package as a git submodule of that second repository.
> > > >>>> Then,
> > > >>>> you can keep things in sync, but the minfi repository remains
> > > >>>> atomic.
> > > >>>>
> > > >>>
> > > >>> I think Sean is correct.
> > > >>> Dan
> > > >>>
> > > >>>
> > > >>>> Sean
> > > >>>> On Feb 21, 2014 9:44 AM, "Kasper Daniel Hansen" <
> > > >>>> kasperdanielhansen@gmail.com > wrote:
> > > >>>>
> > > >>>>
> > > >>>> Question: is it possible to synchronize a subset of a github
> > > >>>> repos?
> > > >>>> For
> > > >>>> minfi, I would like my github to be
> > > >>>>
> > > >>>> minfi-devel
> > > >>>> /minfi
> > > >>>> OTHER SCRIPTS
> > > >>>>
> > > >>>> where OTHER SCRIPTS could be notes or test scripts I use for
> > > >>>> internal
> > > >>>> development. I then only want to synchronize the
> > > >>>> minfi-devel/minfi
> > > >>>> directory with Bioc.
> > > >>>>
> > > >>>> Kasper
> > > >>>>
> > > >>>>
> > > >>>> On Sun, Feb 9, 2014 at 9:55 AM, Kasper Daniel Hansen <
> > > >>>> kasperdanielhansen@gmail.com > wrote:
> > > >>>>
> > > >>>>> Seems to work for me; I have now populated my github repo.
> > > >>>>>
> > > >>>>> Thanks for the help,
> > > >>>>> Kasper
> > > >>>>>
> > > >>>>>
> > > >>>>> On Sun, Feb 9, 2014 at 2:35 AM, Dan Tenenbaum <
> > > >>>>> dtenenba@fhcrc.org
> > > >>>>>> wrote:
> > > >>>>>
> > > >>>>>> This should be fixed now.
> > > >>>>>> Thanks.
> > > >>>>>> Dan
> > > >>>>>>
> > > >>>>>>
> > > >>>>>> ----- Original Message -----
> > > >>>>>>> From: "Kasper Daniel Hansen" < kasperdanielhansen@gmail.com >
> > > >>>>>>> To: "Dan Tenenbaum" < dtenenba@fhcrc.org >
> > > >>>>>>> Cc: bioc-devel@r-project.org
> > > >>>>>>> Sent: Saturday, February 8, 2014 7:07:44 PM
> > > >>>>>>> Subject: Re: [Bioc-devel] Fwd: Bioconductor git-svn bridge is
> > > >>>>>>> available
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>> Yes, see screenshot
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>> (I do know I have a whitespace in front of the github url and
> > > >>>>>>> I
> > > >>>>>>> get a
> > > >>>>>>> note and I fixed it.
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>> Kasper
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>> On Sat, Feb 8, 2014 at 9:56 PM, Dan Tenenbaum <
> > > >>>>>>> dtenenba@fhcrc.org >
> > > >>>>>>> wrote:
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>> https://github.com/kasperdanielhansen/minfi
> > > >>>>>>>
> > > >>>>>>>
> > > >>>>>>
> > > >>>>>
> > > >>>>>
> > > >>>>
> > > >>>> [[alternative HTML version deleted]]
> > > >>>>
> > > >>>> _______________________________________________
> > > >>>> Bioc-devel@r-project.org mailing list
> > > >>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > > >>>>
> > > >>>
> > > >>
> > > >>       [[alternative HTML version deleted]]
> > > >>
> > > >> _______________________________________________
> > > >> Bioc-devel@r-project.org mailing list
> > > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > > >
> > > >
> > > >
> > > >
> > > > --
> > > >  The Wellcome Trust Sanger Institute is operated by Genome Research
> > > >  Limited, a charity registered in England with number 1021457 and a
> > > >  company registered in England with number 2742969, whose
> > > >  registered
> > > >  office is 215 Euston Road, London, NW1 2BE.
> > > >
> > > > _______________________________________________
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> > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >
> > > _______________________________________________
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> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> > >
> >
> > _______________________________________________
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> >
>
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>
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