Sorry, I hadn't updated since yesterday morning. That bug has existed for a
year; what is the chance that it could be fixed and discovered so closely
in time?

My apologies,
Michael


On Thu, Apr 3, 2014 at 12:42 PM, Sonali Arora <sarora@fhcrc.org> wrote:

>
> Hi Micheal ,
>
> I updated the code for renameSeqlevels yesterday in response to a test
> case.
>
> From the function -
>
> level <- seqlevels(x)
> idx <- match(nms,level)
> idx <- idx[complete.cases(idx)]
> value <- replace(level,idx , value[1:length(idx)])
>
> It is still matching nms (names(value) ) and level ( seqlevels(x))
>
> Could you please be a little more specific about your question?
> or give me a test case where it is behaving differently from before?
>
> Thanks
> Sonali.
>
>
>
> On 4/3/2014 11:40 AM, Michael Lawrence wrote:
>
>> Hi,
>>
>> It looks like renameSeqlevels is supposed to match names(value) to the
>> seqlevels for the rename, but this is obviously not what the code does.
>> Which one is right? The one in the documentation seems most useful.
>>
>> Thanks,
>> Michael
>>
>>         [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
> --
> Thanks and Regards,
> Sonali
>
>

	[[alternative HTML version deleted]]

